Difference between revisions of "Linear Shifted Model (analysis)"
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Default-analysis-icon.png]] Linear Shifted Model |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|biouml.plugins.genemodels.LinearShiftedModelBuilding}} | ||
;Plugin | ;Plugin | ||
:[[Biouml.plugins.genemodels (plugin)|biouml.plugins.genemodels (Gene expression models building)]] | :[[Biouml.plugins.genemodels (plugin)|biouml.plugins.genemodels (Gene expression models building)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | Linear Shifted Model of gene expression regulation | + | Linear Shifted Model of gene expression regulation. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 15: | Line 17: | ||
* '''Regulator list''' – Table with regulators ID | * '''Regulator list''' – Table with regulators ID | ||
* '''Target list''' – Table with regulators ID | * '''Target list''' – Table with regulators ID | ||
| + | * '''P-value threshold''' – Only results with a P-value below this threshold will appear in the output | ||
| + | * '''Output table''' – Output table | ||
| + | * '''Maximum shift''' – Maximum shift between regulator and target | ||
| + | * '''Shift definition''' – Shift definition | ||
| + | * '''Include degradation''' – Include protein degradation in gene regulation model | ||
| + | * '''Target smothing type''' – Smoothing type for target gene profile | ||
| + | ** '''Error''' – Spline error | ||
| + | * '''Regulator smothing type''' – Smoothing type for regulator gene profile | ||
| + | ** '''Error''' – Spline error | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Gene models (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Linear Shifted Model
- Provider
- Institute of Systems Biology
- Class
LinearShiftedModelBuilding- Plugin
- biouml.plugins.genemodels (Gene expression models building)
[edit] Description
Linear Shifted Model of gene expression regulation.
[edit] Parameters:
- Number of experiments – Number of experiments
- Experiments – Experiments
- Regulator list – Table with regulators ID
- Target list – Table with regulators ID
- P-value threshold – Only results with a P-value below this threshold will appear in the output
- Output table – Output table
- Maximum shift – Maximum shift between regulator and target
- Shift definition – Shift definition
- Include degradation – Include protein degradation in gene regulation model
- Target smothing type – Smoothing type for target gene profile
- Error – Spline error
- Regulator smothing type – Smoothing type for regulator gene profile
- Error – Spline error
