Difference between revisions of "Linear Shifted Model (analysis)"

From BioUML platform
Jump to: navigation, search
(Plugin name added)
(Automatic synchronization with BioUML)
 
(7 intermediate revisions by one user not shown)
Line 1: Line 1:
 
;Analysis title
 
;Analysis title
:[[File:GeneModels-Linear-Shifted-Model-icon.png]] Linear Shifted Model
+
:[[File:Default-analysis-icon.png]] Linear Shifted Model
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 +
;Class
 +
:{{Class|biouml.plugins.genemodels.LinearShiftedModelBuilding}}
 
;Plugin
 
;Plugin
:biouml.plugins.genemodels (Gene expression models building)
+
:[[Biouml.plugins.genemodels (plugin)|biouml.plugins.genemodels (Gene expression models building)]]
  
 
==== Description ====
 
==== Description ====
Linear Shifted Model of gene expression regulation
+
Linear Shifted Model of gene expression regulation.
  
 
==== Parameters: ====
 
==== Parameters: ====
Line 15: Line 17:
 
* '''Regulator list''' – Table with regulators ID
 
* '''Regulator list''' – Table with regulators ID
 
* '''Target list''' – Table with regulators ID
 
* '''Target list''' – Table with regulators ID
 +
* '''P-value threshold''' – Only results with a P-value below this threshold will appear in the output
 +
* '''Output table''' – Output table
 +
* '''Maximum shift''' – Maximum shift between regulator and target
 +
* '''Shift definition''' – Shift definition
 +
* '''Include degradation''' – Include protein degradation in gene regulation model
 +
* '''Target smothing type''' – Smoothing type for target gene profile
 +
** '''Error''' – Spline error
 +
* '''Regulator smothing type''' – Smoothing type for regulator gene profile
 +
** '''Error''' – Spline error
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:GeneModels (analyses group)]]
+
[[Category:Gene models (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Default-analysis-icon.png Linear Shifted Model
Provider
Institute of Systems Biology
Class
LinearShiftedModelBuilding
Plugin
biouml.plugins.genemodels (Gene expression models building)

[edit] Description

Linear Shifted Model of gene expression regulation.

[edit] Parameters:

  • Number of experiments – Number of experiments
  • Experiments – Experiments
  • Regulator list – Table with regulators ID
  • Target list – Table with regulators ID
  • P-value threshold – Only results with a P-value below this threshold will appear in the output
  • Output table – Output table
  • Maximum shift – Maximum shift between regulator and target
  • Shift definition – Shift definition
  • Include degradation – Include protein degradation in gene regulation model
  • Target smothing type – Smoothing type for target gene profile
    • Error – Spline error
  • Regulator smothing type – Smoothing type for regulator gene profile
    • Error – Spline error
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox