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− | GTRD statistics
| + | == Error == |
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− | '''2417''' ChIP-seq experiments for '''470''' distinct sequence specific transcription factors
| + | Cannot retrieve element: databases/GTRD/Data/statistics/index.html |
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− | === Experiments by species ===
| + | Reason: Element not found: databases/GTRD/Data/statistics |
− | [[File:GTRD statistics-by-species.png]]
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− | === Control experiments ===
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− | [[File:GTRD statistics-control.png]]
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− | === Experiments by transcription factor ===
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− | | + | |
− | '''4.07''' experiments per transcription factor in average.
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− | | + | |
− | '''284 (60%)''' transcription factors measured only in one experiment.
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− | | + | |
− | ==== Top 10 transcription factors ====
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− | | + | |
− | {|
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− | |-
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− | !Transcription Factor
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− | !ChIP-seq experiments count
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− | |-
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− | ! align="right"|CTCF <nowiki>[</nowiki>11<nowiki>]</nowiki>
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− | |195
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− | |-
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− | ! align="right"|c-Myc
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− | |45
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− | |-
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− | ! align="right"|Estrogen receptor α (ERα) (NR3A1)
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− | |44
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− | |-
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− | ! align="right"|REST <nowiki>[</nowiki>1+7+1<nowiki>]</nowiki> (NRSF, XBR)
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− | |37
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− | |-
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− | ! align="right"|C/EBPβ (NF-IL6-1)
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− | |37
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− | |-
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− | ! align="right"|GATA-1 (GF-1, EryF1, NF-E1)
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− | |33
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− | |-
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− | ! align="right"|NF-κB p65 (RelA)
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− | |30
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− | |-
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− | ! align="right"|Max
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− | |30
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− | |-
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− | ! align="right"|PU.1 (Spi-1)
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− | |29
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− | |-
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− | ! align="right"|Glucocorticoid receptor (GR) (NR3C1)
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− | |24
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− | |}
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− | | + | |
− | === ChIP-seq peaks ===
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− | | + | |
− | {|
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− | |-
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− | ! align="right"|Total:
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− | |5.9515E7
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− | |-
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− | ! align="right"|Per experiment in avg.:
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− | |32899
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− | |-
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− | ! align="right"|Experiments with peaks:
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− | |1809
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− | |}
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− | [[File:GTRD statistics-peakCounts.png]]
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− | === Alignment ===
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− | | + | |
− | {|
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− | |-
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− | ! align="right"|Total:
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− | |5.8848E10
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− | |-
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− | ! align="right"|Per experiment in avg.:
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− | |2.5675E7
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− | |-
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− | ! align="right"|Experiments with alignment:
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− | |2292
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− | |}
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− | [[File:GTRD statistics-alignCounts.png]]
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− | === Raw reads ===
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− | | + | |
− | {|
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− | |-
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− | ! align="right"|Total:
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− | |8.0808E10
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− | |-
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− | ! align="right"|Per experiment in avg.:
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− | |3.4937E7
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− | |-
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− | ! align="right"|Experiments with alignment:
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− | |2313
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− | |}
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− | [[File:GTRD statistics-readCounts.png]]
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− | === Percent aligned per experiment distribution ===
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− | [[File:GTRD statistics-percentAligned.png]]
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