Difference between revisions of "GTRD"

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==Database statistics==
 
==Database statistics==
 
GTRD uses 2417 ChIP-seq experiments for 470 distinct sequence specific transcription factors.
 
GTRD uses 2417 ChIP-seq experiments for 470 distinct sequence specific transcription factors.
[[File:gtrd_exp_by_specie.png|thumb|ChIP-seq experiments by species]]
+
[[File:gtrd_exp_by_specie.png|ChIP-seq experiments by species]]
 
Most of ChIP-seq experiments (1638) have corresponding control experiment.
 
Most of ChIP-seq experiments (1638) have corresponding control experiment.
 
[[File:gtrd_exp_control.png|thumb|Control experiments]]
 
[[File:gtrd_exp_control.png|thumb|Control experiments]]

Revision as of 17:37, 1 July 2013

GTRD (Gene Transcription Regulation Database) is a database of transcription factor binding sites identified from ChIP-seq experiments. GTRD identifies binding sites from ChIP-seq experiments available from literature, GEO, SRA and ENCODE databases.

The web interface to GTRD is freely available at http://192.168.199.241/bioumlweb/#anonymous=true&perspective=GTRD.

Database statistics

GTRD uses 2417 ChIP-seq experiments for 470 distinct sequence specific transcription factors. ChIP-seq experiments by species Most of ChIP-seq experiments (1638) have corresponding control experiment.

Control experiments
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