Difference between revisions of "Functional classification by diagrams (analysis)"

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;Analysis title
:[[File:Data-Functional-classification-by-diagrams-icon.png]] Functional classification by diagrams
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:[[File:Gene-set-analysis-Functional-classification-by-diagrams-icon.png]] Functional classification by diagrams
 
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:[[Institute of Systems Biology]]
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==== Description ====
 
==== Description ====
Functional classification by diagrams
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Functional classification by diagrams.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:Data (analyses group)]]
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[[Category:Gene set analysis (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Gene-set-analysis-Functional-classification-by-diagrams-icon.png Functional classification by diagrams
Provider
Institute of Systems Biology
Class
DiagramClassification
Plugin
biouml.plugins.enrichment (Enrichment analysis plugin)

[edit] Description

Functional classification by diagrams.

[edit] Parameters:

  • Source data set – Input table having Ensembl genes as rows.
  • Type – Type
  • Path to classification root – Specify path to the folder containing classification tables, when 'Repository folder' is selected as classification. Only tables with 'Ensembl gene' type are used for the classification.
  • Reference collection – If specified, this collection will be used as list of all Ensembl genes for custom classification. If not specified, list of all Ensembl genes will be created by combining all categories.
  • Minimal hits to group – Groups with lower number of hits will be filtered out (nmin)
  • Only over-represented (expert) – If checked, under-represented groups will be excluded from the result
  • P-value threshold – P-value threshold (Pmax)
  • Result name – Name and path for the resulting table
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