Difference between revisions of "Filter track by condition (analysis)"
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;Analysis title | ;Analysis title | ||
| − | :Filter track by condition | + | :[[File:Operations-with-genomic-tracks-Filter-track-by-condition-icon.png]] Filter track by condition |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.FilterTrackByCondition}} | ||
| + | ;Plugin | ||
| + | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | This analysis | + | This analysis leaves only those sites which satisfy a given JavaScript condition. Each site from the track is tested against the condition. |
* '''Input track''' – track you want to filter | * '''Input track''' – track you want to filter | ||
* '''Condition''' – JavaScript expression which must return true if condition passed or false otherwise. The following variables are available: | * '''Condition''' – JavaScript expression which must return true if condition passed or false otherwise. The following variables are available: | ||
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** '''from''' – site start position, | ** '''from''' – site start position, | ||
** '''to''' – site end position, | ** '''to''' – site end position, | ||
| + | ** '''length''' – site length, | ||
** '''strand''' – site strand (0 = unknown, 1 = n/a, 2 = +, 3 = −, 4 = both), | ** '''strand''' – site strand (0 = unknown, 1 = n/a, 2 = +, 3 = −, 4 = both), | ||
** '''type''' – site type, | ** '''type''' – site type, | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Operations with genomic tracks (analyses group)]] |
| + | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Filter track by condition
- Provider
- Institute of Systems Biology
- Class
FilterTrackByCondition- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
This analysis leaves only those sites which satisfy a given JavaScript condition. Each site from the track is tested against the condition.
- Input track – track you want to filter
- Condition – JavaScript expression which must return true if condition passed or false otherwise. The following variables are available:
- seq – sequence or chromosome name,
- from – site start position,
- to – site end position,
- length – site length,
- strand – site strand (0 = unknown, 1 = n/a, 2 = +, 3 = −, 4 = both),
- type – site type,
- properties – additional track-specific properties
- Output track – specify the path where to store the result
