Difference between revisions of "Convert table to track (analysis)"

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(Automatic synchronization with BioUML)
 
(Automatic synchronization with BioUML)
 
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This analysis allows you to convert table to track
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;Analysis title
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:[[File:Operations-with-genomic-tracks-Convert-table-to-track-icon.png]] Convert table to track
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;Provider
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:[[Institute of Systems Biology]]
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;Class
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:{{Class|ru.biosoft.bsa.analysis.TableToTrack}}
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;Plugin
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:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
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==== Description ====
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This analysis converts a table to a track.
  
 
==== Parameters: ====
 
==== Parameters: ====
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* '''From column''' – Column where site start coordinate is located
 
* '''From column''' – Column where site start coordinate is located
 
* '''To column''' – Column where site end coordinate is located
 
* '''To column''' – Column where site end coordinate is located
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* '''Strand column''' – Column where site strand is located (+ or -)
 
* '''Sequence collection''' – Sequences to bind the track to
 
* '''Sequence collection''' – Sequences to bind the track to
 
* '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki>
 
* '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki>
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:Operations with genomic tracks (analyses group)]]
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[[Category:ISB analyses]]
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[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Operations-with-genomic-tracks-Convert-table-to-track-icon.png Convert table to track
Provider
Institute of Systems Biology
Class
TableToTrack
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

This analysis converts a table to a track.

[edit] Parameters:

  • Input table – Table to convert to the track
  • Chromosome (sequence) column – Column where chromosome number is located (either like 'chr1', 'chr:1', 'chr.1' or simply '1')
  • From column – Column where site start coordinate is located
  • To column – Column where site end coordinate is located
  • Strand column – Column where site strand is located (+ or -)
  • Sequence collection – Sequences to bind the track to
  • Genome ID string – Something like 'hg18' or 'mm6'
  • Output track – Path where to store the result
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