Difference between revisions of "Convert table to track (analysis)"
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* '''From column''' – Column where site start coordinate is located | * '''From column''' – Column where site start coordinate is located | ||
* '''To column''' – Column where site end coordinate is located | * '''To column''' – Column where site end coordinate is located | ||
| + | * '''Strand column''' – Column where site strand is located (+ or -) | ||
* '''Sequence collection''' – Sequences to bind the track to | * '''Sequence collection''' – Sequences to bind the track to | ||
* '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki> | * '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki> | ||
Revision as of 16:16, 11 December 2014
- Analysis title
Convert table to track
- Provider
- Institute of Systems Biology
- Class
TableToTrack- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
This analysis allows you to convert table to track
Parameters:
- Input table – Table to convert to the track
- Chromosome (sequence) column – Column where chromosome number is located (either like 'chr1', 'chr:1', 'chr.1' or simply '1')
- From column – Column where site start coordinate is located
- To column – Column where site end coordinate is located
- Strand column – Column where site strand is located (+ or -)
- Sequence collection – Sequences to bind the track to
- Genome ID string – Something like 'hg18' or 'mm6'
- Output track – Path where to store the result
