Difference between revisions of "ChIP-seq peak profile (analysis)"
From BioUML platform
(Class name added) |
(Automatic synchronization with BioUML) |
||
| Line 9: | Line 9: | ||
==== Description ==== | ==== Description ==== | ||
| − | This analysis | + | This analysis computes probability profiles for Chip-seq peaks. |
==== Parameters: ==== | ==== Parameters: ==== | ||
Revision as of 18:59, 13 February 2017
- Analysis title
ChIP-seq peak profile
- Provider
- Institute of Systems Biology
- Class
ChIPSeqProfileAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
This analysis computes probability profiles for Chip-seq peaks.
Parameters:
- Peak track – Track with ChIP-seq peaks
- Tag track – Track with aligned tags (reads)
- Fragment size – Mean size of DNA fragments used in immunoprecipitation
- Sigma – Sigma parameter used to model peak shape
- Error rate – Error rate
- Profiled track – Profiled track
