Difference between revisions of "ChIP-seq peak profile (analysis)"
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[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:14, 9 December 2020
- Analysis title
ChIP-seq peak profile
- Provider
- Institute of Systems Biology
- Class
ChIPSeqProfileAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
This analysis computes probability profiles for Chip-seq peaks.
[edit] Parameters:
- Peak track – Track with ChIP-seq peaks
- Tag track – Track with aligned tags (reads)
- Fragment size – Mean size of DNA fragments used in immunoprecipitation
- Sigma – Sigma parameter used to model peak shape
- Error rate – Error rate
- Profiled track – Profiled track
