Difference between revisions of "ChIP-seq peak profile (analysis)"

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;Analysis title
 
;Analysis title
:[[File:ChIP-seq-peak-profile-analysis-icon.png]] ChIP-seq peak profile
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:[[File:ChIP-seq-ChIP-seq-peak-profile-icon.png]] ChIP-seq peak profile
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 +
;Class
 +
:{{Class|ru.biosoft.bsa.analysis.chipseqprofile.ChIPSeqProfileAnalysis}}
 
;Plugin
 
;Plugin
 
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
 
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
  
 
==== Description ====
 
==== Description ====
This analysis allows you to compute probability profiles for Chip-seq peaks.
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This analysis computes probability profiles for Chip-seq peaks.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:ChIP-seq (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:14, 9 December 2020

Analysis title
ChIP-seq-ChIP-seq-peak-profile-icon.png ChIP-seq peak profile
Provider
Institute of Systems Biology
Class
ChIPSeqProfileAnalysis
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

This analysis computes probability profiles for Chip-seq peaks.

[edit] Parameters:

  • Peak track – Track with ChIP-seq peaks
  • Tag track – Track with aligned tags (reads)
  • Fragment size – Mean size of DNA fragments used in immunoprecipitation
  • Sigma – Sigma parameter used to model peak shape
  • Error rate – Error rate
  • Profiled track – Profiled track
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