Difference between revisions of "BioUML - systems biology"

From BioUML platform
Jump to: navigation, search
(Systems biology)
 
(30 intermediate revisions by 3 users not shown)
Line 4: Line 4:
  
 
== Systems biology ==
 
== Systems biology ==
* [[Systems biology|Examples]]
+
* Tutorial
** [[1]]
+
** [[Systems biology - Get started|Getting started]]
** [[2]]
+
** [[Systems biology - manual model construction|Manual model construction]]
* [[Systems biology|Databases]]
+
** [[Systems biology - model import|Model import]]
** [[1]]
+
** [[Systems biology - model layout|Model layout]]
 +
** [[Systems biology - basic model editing|Basic model editing]]
 +
** [[Systems biology - model export|Model export]]
 +
** [[Systems biology - model simulation|Model simulation]]
 +
** [[Manual parameter fitting]]
 +
** [[Parameter identifiability example|Parameter identifiability]]
 +
** [[Sensitivity analysis example|Sensitivity analysis]]
 +
** [[Metabolic control analysis example|Metabolic control analysis]]
 +
** [[Quasi-steady-state analysis example|Quasi-steady-state analysis]]
 +
** [[Optimization examples|Parameters fitting]]
 +
** [[Flux balance analysis|Flux balance analysis]]
 +
 
 +
 
 +
* Databases
 +
** [[...]]
  
 
|valign="top" width="33%"|
 
|valign="top" width="33%"|
  
 
== Quick start ==
 
== Quick start ==
* Create project
+
* [[New BioStore|Create project via BioStore]]
** [[New BioStore|Creating a project via BioStore]]
+
* [[Import (extension point)|Import]]
* Import models
+
** [[SBML models]]
** [[SBML]]
+
** [[SBGN models]]
** [[SBGN]]
+
* [[Diagram document|Create model]]
* Create model
+
** [[Diagram type|Diagram types]]
** [[Diagram types]]
+
 
** [[SBGN process diagram]]
 
** [[SBGN process diagram]]
 
** [[Antimony]]
 
** [[Antimony]]
 
** [[BioNetGen]]
 
** [[BioNetGen]]
 
* Model simulation
 
* Model simulation
** [[Solvers]]
+
** [[Simulation|Solvers]]
 
** [[Plots]]
 
** [[Plots]]
* Parameters fitting
+
* [[Optimization document|Parameters fitting]]
** [[Optimization document|Create optimization document]]
+
* [[Flux balance analysis]]
** [[Optimization examples]]
+
* [[Export (extension point)|Export]]
* [[FBA]]
+
* [[Export]]
+
  
 
|}
 
|}

Latest revision as of 11:53, 21 March 2022

[edit] Systems biology


  • Databases

[edit] Quick start

Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox