Difference between revisions of "Transcript structure analysis"

From BioUML platform
Jump to: navigation, search
(Automatic synchronization with BioUML)

Revision as of 19:01, 13 February 2017

Analysis title
Default-analysis-icon.png Transcript structure analysis
Provider
Institute of Systems Biology
Class
TranscriptStructureAnalysis
Plugin
biouml.plugins.riboseq (RiboSeq Experiment)

Parameters:

  • Transcript set – Transcript set
    • Annotation source – Source of gene annotation
    • Transcripts annotation track – Track with transcripts annotation in BED format
    • Genome sequence – Collection of chromosomal sequences
    • Ensembl – Ensembl database version
    • Transcript subset – Subset of transcripts used in this analysis
    • GTF file – GTF file
  • Output table – Output table
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox