Difference between revisions of "Split VCF by regulation (analysis)"

From BioUML platform
Jump to: navigation, search
(Automatic synchronization with BioUML)
 
(Automatic synchronization with BioUML)
 
(One intermediate revision by one user not shown)
Line 1: Line 1:
 
;Analysis title
 
;Analysis title
:[[File:Default-analysis-icon.png]] Split VCF by regulation
+
:[[File:Genome-enhancer-Split-VCF-by-regulation-icon.png]] Split VCF by regulation
 
;Provider
 
;Provider
 
:[[Biosoft]]
 
:[[Biosoft]]
 
;Class
 
;Class
:{{Class|biouml.plugins.genomeenhancer.SplitVCFByRegulation}}
+
:{{Class|biouml.plugins.genomeenhancer.analysis.SplitVCFByRegulation}}
 
;Plugin
 
;Plugin
 
:[[Biouml.plugins.genomeenhancer (plugin)|biouml.plugins.genomeenhancer (Genome Enhancer)]]
 
:[[Biouml.plugins.genomeenhancer (plugin)|biouml.plugins.genomeenhancer (Genome Enhancer)]]
 +
 +
==== Description ====
 +
This method puts the sites from the ''input VCF track'' that overlap with the sites from the ''regulation track'' to the Yes track result. All other sites are put to the No track result. If not enough sites are taken to the No track (''min no size'' parameter), then sites from ''default VCF'' are added to get the desired size of No track.
  
 
==== Parameters: ====
 
==== Parameters: ====

Latest revision as of 18:15, 9 December 2020

Analysis title
Genome-enhancer-Split-VCF-by-regulation-icon.png Split VCF by regulation
Provider
Biosoft
Class
SplitVCFByRegulation
Plugin
biouml.plugins.genomeenhancer (Genome Enhancer)

[edit] Description

This method puts the sites from the input VCF track that overlap with the sites from the regulation track to the Yes track result. All other sites are put to the No track result. If not enough sites are taken to the No track (min no size parameter), then sites from default VCF are added to get the desired size of No track.

[edit] Parameters:

  • Input VCF – Input VCF
  • Regulation track – Regulation track
  • Default VCF – Default VCF
  • Min no size – Min no size
  • Out yes – Out yes
  • Out no – Out no
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox