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- (hist) Biouml.plugins.reactome.biohub (plugin) [211 bytes]
- (hist) Ru.biosoft.bsa.server (plugin) [211 bytes]
- (hist) Using R in BioUML [219 bytes]
- (hist) SNP (reference type) [253 bytes]
- (hist) Matrices (reference type) [260 bytes]
- (hist) Isoforms - GTRD [270 bytes]
- (hist) ChIP-seq peaks - GTRD [272 bytes]
- (hist) DAE Models examples [274 bytes]
- (hist) Galaxy (host object) [276 bytes]
- (hist) Structures - PDB [276 bytes]
- (hist) Site models - GTRD [277 bytes]
- (hist) Html (element type) [281 bytes]
- (hist) Biouml.plugins.softberry (plugin) [282 bytes]
- (hist) Proteins - PDB [282 bytes]
- (hist) Pathways (reference type) [282 bytes]
- (hist) Genes (reference type) [283 bytes]
- (hist) ChIP experiment - GTRD [283 bytes]
- (hist) Enzymes - ExPASy [283 bytes]
- (hist) Using Galaxy in BioUML [284 bytes]
- (hist) MiRNA - miRBase [284 bytes]
- (hist) Probes (reference type) [286 bytes]
- (hist) Categories (reference type) [286 bytes]
- (hist) Biouml.plugins.pathfinder (plugin) [287 bytes]
- (hist) Substances (reference type) [288 bytes]
- (hist) Cell - EndoNet [292 bytes]
- (hist) Proteins (reference type) [292 bytes]
- (hist) Enzymes - KEGG [292 bytes]
- (hist) Hormone - EndoNet [301 bytes]
- (hist) Transcripts (reference type) [301 bytes]
- (hist) Landing [301 bytes]
- (hist) Biouml.plugins.pass (plugin) [305 bytes]
- (hist) Drugs - DrugBank [305 bytes]
- (hist) Mature-miRNA - miRBase [305 bytes]
- (hist) Categories - BKL [308 bytes]
- (hist) Stem-loop-miRNA - miRBase [312 bytes]
- (hist) VAT output (file format) [313 bytes]
- (hist) Biouml.plugins.bowtie (plugin) [314 bytes]
- (hist) Ru.biosoft.fs (plugin) [314 bytes]
- (hist) Biouml.plugins.node (plugin) [317 bytes]
- (hist) Biouml.plugins.antimony (plugin) [323 bytes]
- (hist) Biouml.plugins.microarray (plugin) [325 bytes]
- (hist) Biouml.plugins.creasemarks (plugin) [327 bytes]
- (hist) Ru.biosoft.plugins.jri (plugin) [327 bytes]
- (hist) Biouml.plugins.sbw (plugin) [328 bytes]
- (hist) DDMoRe consortium [329 bytes]
- (hist) Biouml.plugins.cellml (plugin) [334 bytes]
- (hist) Biouml.plugins.ginsim (plugin) [334 bytes]
- (hist) Ru.biosoft.plugins.graph (plugin) [336 bytes]
- (hist) Docker meta [339 bytes]
- (hist) Biouml.plugins.sbgn (plugin) [340 bytes]
- (hist) Biouml.plugins.biopax (plugin) [345 bytes]
- (hist) Biouml.plugins.seek (plugin) [345 bytes]
- (hist) Table (host object) [347 bytes]
- (hist) Biouml.plugins.cytoscape (plugin) [348 bytes]
- (hist) Biouml.plugins.hemodynamics (plugin) [351 bytes]
- (hist) Biouml.plugins.go (plugin) [352 bytes]
- (hist) BioUML Development Kit [353 bytes]
- (hist) Varscan output (file format) [354 bytes]
- (hist) Biouml.plugins.server (plugin) [357 bytes]
- (hist) Galaxy [358 bytes]
- (hist) Biouml.plugins.lucene (plugin) [362 bytes]
- (hist) HTML file [364 bytes]
- (hist) Biouml.plugins.mirprom (plugin) [364 bytes]
- (hist) BioUML overview [364 bytes]
- (hist) Biouml.plugins.bionetgen (plugin) [366 bytes]
- (hist) Biouml.plugins.agilent (plugin) [367 bytes]
- (hist) Server administrator [368 bytes]
- (hist) KEGG (reference type) [368 bytes]
- (hist) Matrices - GTRD [369 bytes]
- (hist) Find master regulators in mutated network (workflow) [370 bytes]
- (hist) Biouml.plugins.riboseqArticleResult (plugin) [371 bytes]
- (hist) Ru.biosoft.server (plugin) [372 bytes]
- (hist) Proteins - GTRD [372 bytes]
- (hist) Unspecified (reference type) [373 bytes]
- (hist) Filter SPAdes output [376 bytes]
- (hist) BioUML Simulation result (file format) [378 bytes]
- (hist) SBGN examples [382 bytes]
- (hist) Developed models [383 bytes]
- (hist) Agilent microarray file [385 bytes]
- (hist) Genes - BKL [388 bytes]
- (hist) Ru.biosoft.templates (plugin) [389 bytes]
- (hist) Illumina microarray file [390 bytes]
- (hist) Genes - Illumina [393 bytes]
- (hist) Report (host object) [394 bytes]
- (hist) Biouml.plugins.expression (plugin) [396 bytes]
- (hist) BioUML web client [396 bytes]
- (hist) Find master regulators in mutated network (TRANSPATH(R)) (workflow) [397 bytes]
- (hist) Proteins - Transfac [398 bytes]
- (hist) Ensembl (host object) [398 bytes]
- (hist) Categories - ExPASy [398 bytes]
- (hist) Quantification of RNA-seq in BAM format for mouse mm9 single end (workflow) [402 bytes]
- (hist) Image file [404 bytes]
- (hist) Matrices - TRANSFAC [405 bytes]
- (hist) Softberry, Inc. [405 bytes]
- (hist) Proteins - EndoNet [406 bytes]
- (hist) Proteins - BKL [406 bytes]
- (hist) Mapping to ontologies and comparison for two gene sets (TRANSPATH(R)) (workflow) [407 bytes]
- (hist) Mapping to ontologies and comparison for two gene sets (HumanPSD(TM)) (workflow) [407 bytes]
- (hist) Quantification of RNA-seq in FASTQ format for mouse mm9 single end (workflow) [410 bytes]
- (hist) Text output file generated by R (file format) [411 bytes]
- (hist) R installation [415 bytes]
- (hist) Das (host object) [416 bytes]
- (hist) Probes - Agilent Tox Array [420 bytes]
- (hist) Pathways - Reactome [421 bytes]
- (hist) ModelReduction (host object) [421 bytes]
- (hist) Biouml.plugins.research (plugin) [422 bytes]
- (hist) Ru.biosoft.server.servlets (plugin) [423 bytes]
- (hist) Ru.biosoft.proteome (plugin) [424 bytes]
- (hist) Genes - Transpath [425 bytes]
- (hist) Biouml.plugins.kegg (plugin) [428 bytes]
- (hist) Transcripts - Illumina [429 bytes]
- (hist) SBML(CellDesigner) (file format) [431 bytes]
- (hist) Methylation probes - Illumina [433 bytes]
- (hist) Create per TF flat files (analysis) [434 bytes]
- (hist) Autosome.Ru [435 bytes]
- (hist) Update pubmed (analysis) [435 bytes]
- (hist) Pathways - Transpath [438 bytes]
- (hist) Find enriched TF binding sites in variation sites (TRANSFAC(R)) (workflow) [439 bytes]
- (hist) Genes - Unigene [441 bytes]
- (hist) Text file [443 bytes]
- (hist) Proteins - Transpath [443 bytes]
- (hist) Antimony (file format) [446 bytes]
- (hist) Install ExPASy (analysis) [449 bytes]
- (hist) Affymetrix CEL file [451 bytes]
- (hist) Fastq format [453 bytes]
- (hist) Biouml.plugins.chemoinformatics (plugin) [454 bytes]
- (hist) Force directed layout [454 bytes]
- (hist) Probes - Agilent [455 bytes]
- (hist) Genes - Gene symbol [455 bytes]
- (hist) Prepare target genes by expression (analysis) [456 bytes]
- (hist) Text (element type) [458 bytes]
- (hist) Probes - Illumina [459 bytes]
- (hist) Ftp (host object) [462 bytes]
- (hist) Substances - Pharmaceutical compounds [464 bytes]
- (hist) Pindel output (file format) [467 bytes]
- (hist) Galaxy method (element type) [467 bytes]
- (hist) Fastq compressed (file format) [467 bytes]
- (hist) SPAdes stats [471 bytes]
- (hist) Substances - DrugBank (geneXplain) [474 bytes]
- (hist) Proteins - Transpath peptides [478 bytes]
- (hist) Proteins - Transpath isogroups [480 bytes]
- (hist) Find common effectors for multiple gene sets (TRANSPATH(R)) (workflow) [481 bytes]
- (hist) Biouml.plugins.perfectosape (plugin) [484 bytes]
- (hist) Biouml.plugins.download (plugin) [487 bytes]
- (hist) Encode quality metrics estimation (analysis) [487 bytes]
- (hist) BioPAX file [488 bytes]
- (hist) Ru.biosoft.galaxy (plugin) [493 bytes]
- (hist) Biouml.plugins.machinelearning (plugin) [493 bytes]
- (hist) Export per cell clusters (analysis) [496 bytes]
- (hist) Biouml.plugins.metabolics (plugin) [497 bytes]
- (hist) Mapping to ontologies (HumanPSD(TM)) (workflow) [497 bytes]
- (hist) Proteins - Transpath complexes [498 bytes]
- (hist) Dormand-Prince [500 bytes]
- (hist) Remote application client (analysis) [500 bytes]
- (hist) Validate Experiments (analysis) [503 bytes]
- (hist) Proteins - Transpath modified forms [506 bytes]
- (hist) BPMN [507 bytes]
- (hist) Download model (analysis) [508 bytes]
- (hist) Biouml.plugins.das (plugin) [510 bytes]
- (hist) 3D viewer [511 bytes]
- (hist) SEDX archive (file format) [512 bytes]
- (hist) Cytoscape network format [512 bytes]
- (hist) Identify enriched composite modules in promoters (TRANSFAC(R)) (workflow) [513 bytes]
- (hist) Covid 19 parameters [517 bytes]
- (hist) Generic file [520 bytes]
- (hist) R (host object) [521 bytes]
- (hist) Proteins - NCBI [521 bytes]
- (hist) Perfectosape (host object) [521 bytes]
- (hist) Infer network (analysis) [521 bytes]
- (hist) Biouml.plugins.genemodels (plugin) [524 bytes]
- (hist) Sbw (host object) [529 bytes]
- (hist) Categories - GTRD [530 bytes]
- (hist) Research diagram [530 bytes]
- (hist) Biouml.plugins.simulation (plugin) [531 bytes]
- (hist) Network (host object) [531 bytes]
- (hist) Change diagram (analysis) [534 bytes]
- (hist) Matrix library (element type) [536 bytes]
- (hist) IPython format [536 bytes]
- (hist) Categories - Gene ontology [539 bytes]
- (hist) Probes - Affymetrix miRNA-4-0 [539 bytes]
- (hist) Create folder (analysis) [540 bytes]
- (hist) TrackInfo table creation (analysis) [540 bytes]
- (hist) TRANSFAC matrices format [541 bytes]
- (hist) Identify enriched motifs in promoters (TRANSFAC(R)) (workflow) [541 bytes]
- (hist) Install TRANSFAC(R) database (analysis) [543 bytes]
- (hist) Site counts in repeats (analysis) [543 bytes]
- (hist) Copy data element (analysis) [543 bytes]
- (hist) Generate Table From JSON (analysis) [544 bytes]
- (hist) Biouml.plugins.pharm (plugin) [546 bytes]
- (hist) Create state (analysis) [546 bytes]
- (hist) Open per TF view (analysis) [546 bytes]
- (hist) Biouml.plugins.mirbase (plugin) [549 bytes]
- (hist) Prepare finished tables (analysis) [549 bytes]
- (hist) Focused upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) [550 bytes]
- (hist) Probes - Affymetrix HuGene-2-0-st [551 bytes]
- (hist) Probes - Affymetrix HuGene-2-1-st [551 bytes]
- (hist) Probes - Affymetrix RaGene-2-0-st [551 bytes]
- (hist) Institute of Systems Biology [552 bytes]
- (hist) Enriched upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) [552 bytes]
- (hist) ChromatinInfo table creation (analysis) [552 bytes]
- (hist) Plot2D (analysis) [555 bytes]
- (hist) Sort SQL track (analysis) [555 bytes]
- (hist) Identify composite modules in promoters (TRANSFAC(R)) (workflow) [556 bytes]
- (hist) Servers [556 bytes]
- (hist) Color space to nucleotide (analysis) [559 bytes]
- (hist) Probes - Affymetrix HG-U133+ PM [559 bytes]
- (hist) Probes - Affymetrix miRNA-3-0 [559 bytes]
- (hist) Probes - Affymetrix miRNA-2-0 [559 bytes]
- (hist) Probes - Affymetrix miRNA-1-0 [559 bytes]
- (hist) Report (analysis) [562 bytes]
- (hist) Probes - Affymetrix HTA-2-0 [565 bytes]
- (hist) Stub process file (analysis) [565 bytes]
- (hist) Sbml (host object) [569 bytes]
- (hist) Create flat files (analysis) [570 bytes]
- (hist) Run analysis [573 bytes]
- (hist) Element type [577 bytes]
- (hist) RiboseqArticleResult (analysis) [581 bytes]
- (hist) Biouml.plugins.expasy (plugin) [583 bytes]
- (hist) Recon transformer (analysis) [585 bytes]
- (hist) Check quotas (analysis) [589 bytes]
- (hist) Peaks to matrices (workflow) [593 bytes]
- (hist) Search for self-regulating transcription factors (TRANSFAC(R) and TRANSPATH(R)) (workflow) [596 bytes]
- (hist) Cross-species mapping to ontologies, using orthologue information (HumanPSD(TM)) (workflow) [600 bytes]
- (hist) Node (host object) [601 bytes]
- (hist) BAM filter multi-hits (analysis) [601 bytes]
- (hist) Viewpart [604 bytes]
- (hist) Copy folder (analysis) [605 bytes]
- (hist) TRANSFAC profile (file format) [605 bytes]
- (hist) Join GTRD Tracks (analysis) [605 bytes]
- (hist) Split fasta (analysis) [608 bytes]
- (hist) Site Size Filtering (analysis) [613 bytes]
- (hist) Compare Experiments (analysis) [614 bytes]
- (hist) Import ensembl homology (analysis) [614 bytes]
- (hist) SBGN-ML (file format) [615 bytes]
- (hist) Fastx clip [616 bytes]
- (hist) Coverage Profiles Cutoff (analysis) [617 bytes]
- (hist) Systems biology - basic model editing [618 bytes]
- (hist) Biouml.plugins.reactome (plugin) [620 bytes]
- (hist) Substances - KEGG [620 bytes]
- (hist) Model analysis [621 bytes]
- (hist) Export metadata json (analysis) [621 bytes]
- (hist) Share molecules (analysis) [622 bytes]
- (hist) Document pane [626 bytes]
- (hist) Track correlation (analysis) [626 bytes]
- (hist) Rebuild search indexes (analysis) [627 bytes]
- (hist) Merge simulation results (analysis) [627 bytes]
- (hist) Double encode SOLiD (analysis) [629 bytes]
- (hist) Blast alignment coverage (analysis) [630 bytes]
- (hist) Prepare Search by regulation (analysis) [632 bytes]
- (hist) Site Profile Filtering (analysis) [635 bytes]