Search binding sites (analysis)

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Analysis title
Default-analysis-icon.png Search binding sites
Provider
Institute of Systems Biology
Class
SearchBindingSites
Plugin
biouml.plugins.gtrd (GTRD)

Description

Search for TF binding sites in GTRD near the speciefied gene.

Parameters:

  • preparedTables (expert) – preparedTables
  • peaksFolder (expert) – peaksFolder
  • Organism – Organism
  • Gene symbol or ID – Restrict search to sites near this gene, enter 'Any' to search in all genes
  • Transcription factor – Transcription factor
  • Data set – Data set
  • Cell line – Cell line
  • Treatment – Treatment/condition
  • Max gene distance – Maximal distance from site to gene
  • Output type – Type of result
  • Binding sites (expert) – Found transcription factor binding sites
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