Difference between revisions of "Reduce CMA results (analysis)"

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==== Description ====
 
==== Description ====
Reduces resulting CMA model trying to remove insignificant site models.
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This method is trying to reduce the resulting CMA model by excluding some matrices from the model and recalculating the score. If the new score appears to be better, then the reduced model is kept if the score change threshold is below the one, which was specified during the analysis launch. As a result, the method will reduce the resulting CMA model by removing the insignificant site models.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:Composite module analyses (analyses group)]]
 
[[Category:GeneXplain analyses]]
 
[[Category:GeneXplain analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:14, 9 December 2020

Analysis title
Default-analysis-icon.png Reduce CMA results
Provider
geneXplain GmbH
Class
CMAPruner
Plugin
biouml.plugins.cma (Composite module analyst)

[edit] Description

This method is trying to reduce the resulting CMA model by excluding some matrices from the model and recalculating the score. If the new score appears to be better, then the reduced model is kept if the score change threshold is below the one, which was specified during the analysis launch. As a result, the method will reduce the resulting CMA model by removing the insignificant site models.

[edit] Parameters:

  • CMA result – Result of the construct composite modules analysis
  • Score change threshold – Threshold of score change
  • Max iterations (expert) – Maximal number of iterations (maximal number of site models to remove)
  • Output path – Path to analysis result
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