Difference between revisions of "R installation"
From BioUML platform
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| − | This page describes how to install R for BioUML. You need to perform the following steps: | + | This page describes how to install {{R}} for BioUML. You need to perform the following steps: |
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Revision as of 12:44, 19 April 2013
This page describes how to install R for BioUML. You need to perform the following steps:
- R itself:
yum install R
or
apt-get install r-recommended
- Rserve:
apt-get install r-cran-rserve
- BioConductor (from R-console):
source("http://bioconductor.org/biocLite.R")
biocLite()
biocLite("makecdfenv", lib="/usr/local/lib/R/site-library")
- Illumina normalization (from R-console):
biocLite("lumi")
Note that this step may require installation of additional packages in the system like libxml2-dev, libglut3-dev, libcurl4-gnutls-dev.
- Agilent normalization (from R-console):
biocLite("limma")
