Difference between revisions of "Quality control metrics (analysis)"

From BioUML platform
Jump to: navigation, search
(Automatic synchronization with BioUML)

Revision as of 16:33, 12 March 2019

Analysis title
Default-analysis-icon.png Quality control metrics
Provider
Institute of Systems Biology
Class
QualityControlMetrics
Plugin
biouml.plugins.gtrd (GTRD)

Description

Calculation of quality control metrics for assessing tracks from GTRD

Parameters:

  • Species – Select a taxonomical species
  • Path to folder with folders – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks)
  • Folders names – Select folders names
  • Minimal length of peaks – All peaks that are shorter than this threshold will be prolongated
  • Maximal length of peaks – All peaks that are longer than this threshold will be truncated
  • FPCM threshold – FPCM threshold
  • Do add auxiliary information – Do add auxiliary information (such as number of observed peaks without orphans)?
  • Path to output folder – Path to output folder
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox