Difference between revisions of "Prepare Search by regulation (analysis)"

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(Automatic synchronization with BioUML)
(Automatic synchronization with BioUML)
Line 14: Line 14:
  
 
* '''allPeaksPath''' – allPeaksPath
 
* '''allPeaksPath''' – allPeaksPath
* '''Properties for track import''' – Properties for track import
+
* '''ensembl''' – ensembl
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
+
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
+
 
* '''geneMaxDistance''' – geneMaxDistance
 
* '''geneMaxDistance''' – geneMaxDistance
 
* '''outputTable''' – outputTable
 
* '''outputTable''' – outputTable

Revision as of 16:33, 12 March 2019

Analysis title
Default-analysis-icon.png Prepare Search by regulation
Provider
Institute of Systems Biology
Class
PrepareSearchByRegulation
Plugin
biouml.plugins.gtrd (GTRD)

Description

Prepare tables for Search by regulation analysis

Parameters:

  • allPeaksPath – allPeaksPath
  • ensembl – ensembl
  • geneMaxDistance – geneMaxDistance
  • outputTable – outputTable
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