Difference between revisions of "Mixture of normal components (analysis)"
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* '''Minimal region length''' – Minimal length of sequence region | * '''Minimal region length''' – Minimal length of sequence region | ||
* '''Input track''' – Select input track (it must contain ChIP-Seq peaks or merged binding regions depending on input parameter <nowiki>'</nowiki>Is ChIP-Seq peaks<nowiki>'</nowiki> | * '''Input track''' – Select input track (it must contain ChIP-Seq peaks or merged binding regions depending on input parameter <nowiki>'</nowiki>Is ChIP-Seq peaks<nowiki>'</nowiki> | ||
| − | * '''Matrix''' – Path to | + | * '''Matrix''' – Path to frequency matrix |
| − | * '''Type of site model''' – | + | * '''Type of site model''' – Select type of site model |
| − | * '''Number of mixture components''' – | + | * '''Number of mixture components''' – Define number of mixture components (it must be > 1 |
* '''P-value threshold''' – P-value threshold | * '''P-value threshold''' – P-value threshold | ||
| − | * ''' | + | * '''Maximal number of iterations''' – Maximal number of iterations in algorithm |
* '''Output table''' – Table with charts will be created in this location | * '''Output table''' – Table with charts will be created in this location | ||
Latest revision as of 19:00, 13 February 2017
- Analysis title
Mixture of normal components
- Provider
- Institute of Systems Biology
- Class
NormalComponentsMixture- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Mixture of normal components for maximal IPS scores predicted in binding regions (singleTrack) of given tfClass (charts table is created)
[edit] Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Is ChIP-Seq peaks – Is ChIP-Seq peaks (or merged binding regions)
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Minimal region length – Minimal length of sequence region
- Input track – Select input track (it must contain ChIP-Seq peaks or merged binding regions depending on input parameter 'Is ChIP-Seq peaks'
- Matrix – Path to frequency matrix
- Type of site model – Select type of site model
- Number of mixture components – Define number of mixture components (it must be > 1
- P-value threshold – P-value threshold
- Maximal number of iterations – Maximal number of iterations in algorithm
- Output table – Table with charts will be created in this location
