Matrix comparison (analysis)

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Revision as of 12:20, 25 August 2015 by BioUML wiki Bot (Talk | contribs)

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Analysis title
Default-analysis-icon.png Matrix comparison
Provider
Institute of Systems Biology
Class
MatrixComparison
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Comparison of matrices by given site model type

Parameters:

  • Input track – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Is around summit – Is around summit
  • Minimal region length – Minimal length of sequence region
  • % of best sites – Best sites percentage
  • Type of site model – Type of site model that will be used for matrix derivation
  • Matrices – Select matrices
  • Are also all matrices – Would you like to consider also all matrices selected?
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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