Difference between revisions of "Matrix comparison (analysis)"
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==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * ''' | + | * '''Type of site model''' – Select type of site model that will be used for matrix derivation |
| − | * ''' | + | * '''Window size''' – Window size |
| − | + | * '''Path to table with sequence sample''' – Select path to table with sequence sample | |
| − | + | * '''Name of table column with sequence sample''' – Select name of table column with sequence sample | |
| − | + | * '''Are both strands?''' – Do analize both strands of sequences? (if <nowiki>'</nowiki>no<nowiki>'</nowiki>, then only strand (+) will be analyzed) | |
| − | + | ||
* '''% of best sites''' – Best sites percentage | * '''% of best sites''' – Best sites percentage | ||
| − | * ''' | + | * '''Are also all matrices''' – Would you like to consider also all matrices simultaneously? |
| − | + | * '''Paths to matrices''' – Paths to matrices | |
| − | * ''' | + | |
* '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist | * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist | ||
Latest revision as of 19:00, 13 February 2017
- Analysis title
Matrix comparison
- Provider
- Institute of Systems Biology
- Class
MatrixComparison- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Comparison of matrices by given site model type
[edit] Parameters:
- Type of site model – Select type of site model that will be used for matrix derivation
- Window size – Window size
- Path to table with sequence sample – Select path to table with sequence sample
- Name of table column with sequence sample – Select name of table column with sequence sample
- Are both strands? – Do analize both strands of sequences? (if 'no', then only strand (+) will be analyzed)
- % of best sites – Best sites percentage
- Are also all matrices – Would you like to consider also all matrices simultaneously?
- Paths to matrices – Paths to matrices
- Path to output folder – Output folder will be created under this location when it doesn't exist
