Difference between revisions of "Matrix comparison (analysis)"
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* '''Matrices''' – Select matrices | * '''Matrices''' – Select matrices | ||
* '''Are also all matrices''' – Would you like to consider also all matrices selected? | * '''Are also all matrices''' – Would you like to consider also all matrices selected? | ||
| − | * '''Path to output folder''' – Output folder will be created under this location | + | * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Revision as of 12:20, 25 August 2015
- Analysis title
Matrix comparison
- Provider
- Institute of Systems Biology
- Class
MatrixComparison- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Comparison of matrices by given site model type
Parameters:
- Input track – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Is around summit – Is around summit
- Minimal region length – Minimal length of sequence region
- % of best sites – Best sites percentage
- Type of site model – Type of site model that will be used for matrix derivation
- Matrices – Select matrices
- Are also all matrices – Would you like to consider also all matrices selected?
- Path to output folder – Output folder will be created under this location when it doesn't exist
