Locations of best sites (analysis)

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Analysis title
Default-analysis-icon.png Locations of best sites
Provider
Institute of Systems Biology
Class
BestSiteLocations
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Best sites: location of best sites in single chip-seq track; summit(yes/no)

Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Input track – Select input peaks track (must be the result of MACS or SISSRs analysis)
  • Is around summit – Is around summit
  • Minimal region length – Minimal length of sequence region
  • Matrix – Path to positional weight matrix
  • Output table – Table with charts will be created in this location
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