Difference between revisions of "Locations of best sites (analysis)"

From BioUML platform
Jump to: navigation, search
(Automatic synchronization with BioUML)
 
m (Protected "Locations of best sites (analysis)": Autogenerated page (‎[edit=sysop] (indefinite)))

Revision as of 18:12, 9 July 2013

Analysis title
Default-analysis-icon.png Locations of best sites
Provider
Institute of Systems Biology
Class
BestSiteLocations
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Best sites: location of best sites in single chip-seq track; summit(yes/no)

Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Input track – Select input peaks track (must be the result of MACS or SISSRs analysis)
  • Is around summit – Is around summit
  • Minimal region length – Minimal length of sequence region
  • Matrix – Path to positional weight matrix
  • Output table – Table with charts will be created in this location
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox