Difference between revisions of "Illumina normalization (analysis)"
From BioUML platform
(Automatic synchronization with BioUML) |
(Automatic synchronization with BioUML) |
||
| (11 intermediate revisions by one user not shown) | |||
| Line 1: | Line 1: | ||
| + | ;Analysis title | ||
| + | :[[File:Microarray-normalization-Illumina-normalization-icon.png]] Illumina normalization | ||
| + | ;Provider | ||
| + | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.analysis.IlluminaNormalization}} | ||
| + | ;Plugin | ||
| + | :[[Ru.biosoft.analysis (plugin)|ru.biosoft.analysis (Common methods of data analysis plug-in)]] | ||
| + | |||
=== Illumina Normalization === | === Illumina Normalization === | ||
| Line 12: | Line 21: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Microarray normalization (analyses group)]] |
| + | [[Category:ISB analyses]] | ||
| + | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Illumina normalization
- Provider
- Institute of Systems Biology
- Class
IlluminaNormalization- Plugin
- ru.biosoft.analysis (Common methods of data analysis plug-in)
[edit] Illumina Normalization
Normalization of Illumina files based on the functions of the Bioconductor LUMI package.
Normalization will be done using the lumiExpresso function which starts from raw Illumina probe intensities and returns expression values.
For the detailed description of the LUMI functions see the LUMI reference manual.
Note: Before the Illumina Normalization is started you need to install R and Rserve on your computer. For more information on installing, please visit R-project website.
Note: Duplicated identifiers will be modified.
