IPS prediction (analysis)

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Revision as of 15:31, 10 June 2013 by BioUML wiki Bot (Talk | contribs)

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Analysis title
File:Binding-regions-IPS-prediction-icon.png IPS prediction
Provider
Institute of Systems Biology
Class
IPSPrediction
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

IPS-prediction and tag density

Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
  • Matrix – Path to positional weight matrix
  • Species – Select a taxonomical species
  • TF class – TF class in Wingender classification (like '2.1.1.1.4')
  • Output table – Table with charts will be created in this location
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