Difference between revisions of "IPS prediction (analysis)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
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==== Description ==== | ==== Description ==== | ||
Revision as of 13:38, 17 June 2013
- Analysis title
IPS prediction
- Provider
- Institute of Systems Biology
- Class
IPSPredictionAnalysis- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
IPS-prediction and tag density
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Matrix – Path to positional weight matrix
- Species – Select a taxonomical species
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Output table – Table with charts will be created in this location
