IPS ROC-curves (analysis)

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Revision as of 15:31, 10 June 2013 by BioUML wiki Bot (Talk | contribs)

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Analysis title
File:Binding-regions-IPS-ROC-curves-icon.png IPS ROC-curves
Provider
Institute of Systems Biology
Class
IPSROCCurve
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

ROC-curves: influence of common score threshold on IPSSiteModel (or logIPSSiteModel) in merged binding regions

Parameters:

  • Input track – Select input ChIP-seq track (must be the result of 'Merge binding regions for cell-lines' analysis)
  • Matrix – Path to positional weight matrix
  • TF class – TF class in Wingender classification (like '2.1.1.1.4')
  • Log transformation – Check to consider log-models
  • Output table – Table with charts will be created in this location
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