Difference between revisions of "Gene set to track (analysis)"

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;Analysis title
 
;Analysis title
:[[File:BSA-Gene-set-to-track-icon.png]] Gene set to track
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:[[File:Match-sites-and-genes-Gene-set-to-track-icon.png]] Gene set to track
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 +
;Class
 +
:{{Class|ru.biosoft.bsa.analysis.GeneSetToTrack}}
 
;Plugin
 
;Plugin
 
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
 
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
  
 
==== Description ====
 
==== Description ====
Convert gene set to track
+
Convert gene set to track.
  
 
==== Parameters: ====
 
==== Parameters: ====
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* '''From''' – From position (relative to gene start)
 
* '''From''' – From position (relative to gene start)
 
* '''To''' – To position (relative to gene start)
 
* '''To''' – To position (relative to gene start)
 +
* '''Close TSS handling''' (expert) – How to handle TSS located close to each other
 +
* '''Leading column''' (expert) – Numeric column used to select one TSS from adjacent
 +
* '''Minimal distance''' – Minimal distance between adjacent TSS
 
* '''Output name''' – Output name
 
* '''Output name''' – Output name
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
+
[[Category:Match sites and genes (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Match-sites-and-genes-Gene-set-to-track-icon.png Gene set to track
Provider
Institute of Systems Biology
Class
GeneSetToTrack
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Convert gene set to track.

[edit] Parameters:

  • Table – Table of source genes
  • Species – Taxonomical species
  • From – From position (relative to gene start)
  • To – To position (relative to gene start)
  • Close TSS handling (expert) – How to handle TSS located close to each other
  • Leading column (expert) – Numeric column used to select one TSS from adjacent
  • Minimal distance – Minimal distance between adjacent TSS
  • Output name – Output name
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