Difference between revisions of "GeneXplain"
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[[File:geneXplain logo.png|thumb|geneXplain platfrom logo]] | [[File:geneXplain logo.png|thumb|geneXplain platfrom logo]] | ||
| − | The '''geneXplain''' platform is an online toolbox and workflow management system for a broad range of bioinformatics and systems biology applications. It is developed by [[geneXplain GmbH]]. The technology behind the geneXplain platform is [[BioUML]], which has been built, improved and supported for many years at the [[ | + | The '''geneXplain''' platform is an online toolbox and workflow management system for a broad range of bioinformatics and systems biology applications. It is developed by [[geneXplain GmbH]]. The technology behind the geneXplain platform is [[BioUML]], which has been built, improved and supported for many years at the [[BIOSOFT.RU]] in Novosibirsk. |
Individual modules, or bricks, of the platform are unified under a standardized interface, with a consistent look-and-feel and can flexibly be put together to comprehensive workflows. The workflow management is intuitively handled through a simple drag-and-drop system. With this system, you can edit the predefined workflows or compose your own workflows from scratch. Your own Bricks can easily be added as scripts or plug-ins and incorporated into workflows as well. | Individual modules, or bricks, of the platform are unified under a standardized interface, with a consistent look-and-feel and can flexibly be put together to comprehensive workflows. The workflow management is intuitively handled through a simple drag-and-drop system. With this system, you can edit the predefined workflows or compose your own workflows from scratch. Your own Bricks can easily be added as scripts or plug-ins and incorporated into workflows as well. | ||
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The geneXplain platform provides a number of state-of-the-art bricks; some of them can be obtained free of charge, while others require licensing for a small fee in order to guarantee active maintenance and dynamic adaptation to the rapidly developing know-how in this field. | The geneXplain platform provides a number of state-of-the-art bricks; some of them can be obtained free of charge, while others require licensing for a small fee in order to guarantee active maintenance and dynamic adaptation to the rapidly developing know-how in this field. | ||
| − | The first release of the geneXplain platform was specifically designed to support all kinds of ''[ | + | The first release of the geneXplain platform was specifically designed to support all kinds of ''[[wikipedia:gene expression|gene expression]] analyses'' by a number of bricks that facilitate: |
* Normalization of raw data, | * Normalization of raw data, | ||
* Statistical analyses, | * Statistical analyses, | ||
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* Keynode identification. | * Keynode identification. | ||
| − | Besides providing a wide range of sophisticated bricks (more than 60), the geneXplain platform also facilitates standard analyses through a number ( | + | Besides providing a wide range of sophisticated bricks (more than 60), the geneXplain platform also facilitates standard analyses through a number ({{PAGESINCATEGORY:GeneXplain workflows|pages}}) of pre-composed [[workflows]] concatenating some of the most important Bricks. |
| + | |||
| + | === Availability === | ||
| + | The geneXplain platform is available here: | ||
| + | http://platform.genexplain.com/ | ||
The current version is {{geneXplain current version}}. A free trial is available. | The current version is {{geneXplain current version}}. A free trial is available. | ||
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* [[:Category:GeneXplain analyses|geneXplain analyses]] | * [[:Category:GeneXplain analyses|geneXplain analyses]] | ||
* [[:Category:GeneXplain workflows|geneXplain workflows]] | * [[:Category:GeneXplain workflows|geneXplain workflows]] | ||
| + | |||
| + | [[Category:Software]] | ||
Latest revision as of 16:43, 27 October 2023
| This page or section is a stub. Please add more information here! |
The geneXplain platform is an online toolbox and workflow management system for a broad range of bioinformatics and systems biology applications. It is developed by geneXplain GmbH. The technology behind the geneXplain platform is BioUML, which has been built, improved and supported for many years at the BIOSOFT.RU in Novosibirsk.
Individual modules, or bricks, of the platform are unified under a standardized interface, with a consistent look-and-feel and can flexibly be put together to comprehensive workflows. The workflow management is intuitively handled through a simple drag-and-drop system. With this system, you can edit the predefined workflows or compose your own workflows from scratch. Your own Bricks can easily be added as scripts or plug-ins and incorporated into workflows as well.
The geneXplain platform provides a number of state-of-the-art bricks; some of them can be obtained free of charge, while others require licensing for a small fee in order to guarantee active maintenance and dynamic adaptation to the rapidly developing know-how in this field.
The first release of the geneXplain platform was specifically designed to support all kinds of gene expression analyses by a number of bricks that facilitate:
- Normalization of raw data,
- Statistical analyses,
- Functional analyses,
- Pathway analysis,
- Keynode identification.
Besides providing a wide range of sophisticated bricks (more than 60), the geneXplain platform also facilitates standard analyses through a number (91) of pre-composed workflows concatenating some of the most important Bricks.
[edit] Availability
The geneXplain platform is available here: http://platform.genexplain.com/
The current version is 2.4. A free trial is available.
