Gathering genome statistics (analysis)

Analysis title

File:Binding-regions-Gathering-genome-statistics-icon.png Gathering genome statistics

Provider

Institute of Systems Biology

Class

GatheringGenomeStatistics

Plugin

ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Preliminary identification of the auxiliary information about genome (creation of tracks: '_chromosomeGaps', '_chromosomeLengths', '_genes', 'summaryOfGenes')

Parameters:

• Sequences collection – Select a source of nucleotide sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Path to output folder – Output folder will be created under this location