Difference between revisions of "GWAS format"

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(Automatic synchronization with BioUML)

Revision as of 18:15, 9 December 2020

File format title
GWAS format (*.tsv, *.txt)
Element type
Type-track-icon.png track
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

GWAS format (*.tsv, *.txt)

Import GWAS tables as tracks

Parameters:

  • File to import – Specify file from your computer
  • Target – Path in repository to put imported file to
  • Properties – Additional importer parameters
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
    • Genome ID string – Something like 'hg18' or 'mm6'
    • Header row index – Index for row with column names, 0 means no header
    • First data row index – Index for first row with data
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