Difference between revisions of "Fold-Change calculation (analysis)"

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;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
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:{{Class|ru.biosoft.analysis.FoldChange}}
 
;Plugin
 
;Plugin
 
:[[Ru.biosoft.analysis (plugin)|ru.biosoft.analysis (Common methods of data analysis plug-in)]]
 
:[[Ru.biosoft.analysis (plugin)|ru.biosoft.analysis (Common methods of data analysis plug-in)]]

Revision as of 11:15, 31 May 2013

Analysis title
Statistics-Fold-Change-calculation-icon.png Fold-Change calculation
Provider
Institute of Systems Biology
Class
FoldChange
Plugin
ru.biosoft.analysis (Common methods of data analysis plug-in)

Description

Calculates fold-change values

Parameters:

  • Experiment – Table with experimental(test) data
    • Table – Table path
    • Columns – List of columns to use
  • Control – Table with control data
    • Table – Table path
    • Columns – List of columns to use
  • Data handling – Type of fold-change: average none, average control, average experiment, average all and one to one
  • Input logarithm base – Logarithm base of input data
  • Result logarithm base – Logarithm base of result
  • Value boundaries (expert) – All values outside these boundaries will be treated as outliers
    • Lower boundary – Input values below this threshold will be ignored
    • Upper boundary – Input values above this threshold will be ignored
  • Output table – Output table
  • Output histogram – If specified, histogram will be created showing fold-change distribution
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