Difference between revisions of "Distinct TF classes (analysis)"

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;Analysis title
 
;Analysis title
:[[File:Binding-regions-Distinct-TF-classes-icon.png]] Distinct TF classes
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:[[File:Default-analysis-icon.png]] Distinct TF classes
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Class
 
;Class
:{{Class|ru.biosoft.bsa.analysis.bindingRegions.DistinctTFClasses}}
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:{{Class|biouml.plugins.bindingregions.analysis.DistinctTFClasses}}
 
;Plugin
 
;Plugin
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
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:[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]
  
 
==== Description ====
 
==== Description ====
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* '''Species''' – Select a taxonomical species
 
* '''Species''' – Select a taxonomical species
 
* '''Minimal number of overlaps''' – Minimal number of overlaps
 
* '''Minimal number of overlaps''' – Minimal number of overlaps
* '''Path to output folder''' – Output folder will be created under this location
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* '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]

Latest revision as of 12:19, 25 August 2015

Analysis title
Default-analysis-icon.png Distinct TF classes
Provider
Institute of Systems Biology
Class
DistinctTFClasses
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

[edit] Description

Distinct TF classes: Identification of their binding regions as cisModules2 of their repeated tracks

[edit] Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
  • Species – Select a taxonomical species
  • Minimal number of overlaps – Minimal number of overlaps
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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