Difference between revisions of "Create weight matrix model (analysis)"

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Creates weight matrix site model
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;Analysis title
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:[[File:Motif-discovery-Create-weight-matrix-model-icon.png]] Create weight matrix model
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;Provider
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:[[Institute of Systems Biology]]
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;Class
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:{{Class|ru.biosoft.bsa.analysis.createsitemodel.CreateWeightMatrixModel}}
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;Plugin
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:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
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==== Description ====
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Creates weight matrix site model.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:Motif discovery (analyses group)]]
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[[Category:ISB analyses]]
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[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Motif-discovery-Create-weight-matrix-model-icon.png Create weight matrix model
Provider
Institute of Systems Biology
Class
CreateWeightMatrixModel
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Creates weight matrix site model.

[edit] Parameters:

  • Position frequency matrix – Position frequency matrix
  • Model type – Type of site model
  • Threshold – Threshold
  • Nucleotide frequencies – Nucleotide frequencies in background sequence
    • a – a
    • c – c
    • g – g
    • t – t
  • Output collection – Collection where site model will be saved
  • Model name – The name of model name to create
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