Difference between revisions of "Create weight matrix model (analysis)"
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Motif-discovery-Create-weight-matrix-model-icon.png]] Create weight matrix model |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.createsitemodel.CreateWeightMatrixModel}} | ||
| + | ;Plugin | ||
| + | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | Creates weight matrix site model | + | Creates weight matrix site model. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Motif discovery (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Create weight matrix model
- Provider
- Institute of Systems Biology
- Class
CreateWeightMatrixModel- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
Creates weight matrix site model.
[edit] Parameters:
- Position frequency matrix – Position frequency matrix
- Model type – Type of site model
- Threshold – Threshold
- Nucleotide frequencies – Nucleotide frequencies in background sequence
- a – a
- c – c
- g – g
- t – t
- Output collection – Collection where site model will be saved
- Model name – The name of model name to create
