Difference between revisions of "Create matrix by mixture of normal components (analysis)"

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* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>)
 
* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>)
 
* '''Minimal region length''' – Minimal length of sequence region
 
* '''Minimal region length''' – Minimal length of sequence region
* '''P-value''' – P-value
+
* '''P-value threshold''' – P-value threshold
* '''Max iterations''' – Maximal number of iterations for algorithm
+
* '''Maximal number of iterations''' – Maximal number of iterations in algorithm
 
* '''Number of matrices''' – How many matrices will be constructed
 
* '''Number of matrices''' – How many matrices will be constructed
 
* '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus
 
* '''Initial matrix as consensus''' – Check this if you want to specify an initial matrix as consensus
* '''Consensus''' – Specify the consensus of initial matrix
+
* '''Consensus''' – Specify the consensus
 
* '''Matrix path''' – Specify the path to the initial matrix
 
* '''Matrix path''' – Specify the path to the initial matrix
 
* '''Output matrix library''' – Matrix library to store the resulting matrices (will be created if not exists)
 
* '''Output matrix library''' – Matrix library to store the resulting matrices (will be created if not exists)
* '''Matrix name prefix''' – All matrices will be created with given prefix
+
* '''Matrix name prefix''' – All matrices will be created with given name prefix
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]

Latest revision as of 19:00, 13 February 2017

Analysis title
Default-analysis-icon.png Create matrix by mixture of normal components
Provider
Institute of Systems Biology
Class
CreateMatrixByMixture
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

[edit] Description

Calculation of matrix by using mixture of normal components for maximal IPS scores

[edit] Parameters:

  • Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
  • TF class – TF class in Wingender classification (like '2.1.1.1.4')
  • Minimal region length – Minimal length of sequence region
  • P-value threshold – P-value threshold
  • Maximal number of iterations – Maximal number of iterations in algorithm
  • Number of matrices – How many matrices will be constructed
  • Initial matrix as consensus – Check this if you want to specify an initial matrix as consensus
  • Consensus – Specify the consensus
  • Matrix path – Specify the path to the initial matrix
  • Output matrix library – Matrix library to store the resulting matrices (will be created if not exists)
  • Matrix name prefix – All matrices will be created with given name prefix
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