Difference between revisions of "Create matrix by mixture of normal components (analysis)"

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(Automatic synchronization with BioUML)
(Automatic synchronization with BioUML)
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* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>)
 
* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>)
 
* '''Minimal region length''' – Minimal length of sequence region
 
* '''Minimal region length''' – Minimal length of sequence region
* '''P-value''' – P-value
+
* '''P-value threshold''' – P-value threshold
 
* '''Max iterations''' – Maximal number of iterations for algorithm
 
* '''Max iterations''' – Maximal number of iterations for algorithm
 
* '''Number of matrices''' – How many matrices will be constructed
 
* '''Number of matrices''' – How many matrices will be constructed

Revision as of 12:19, 25 August 2015

Analysis title
Default-analysis-icon.png Create matrix by mixture of normal components
Provider
Institute of Systems Biology
Class
CreateMatrixByMixture
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Calculation of matrix by using mixture of normal components for maximal IPS scores

Parameters:

  • Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
  • TF class – TF class in Wingender classification (like '2.1.1.1.4')
  • Minimal region length – Minimal length of sequence region
  • P-value threshold – P-value threshold
  • Max iterations – Maximal number of iterations for algorithm
  • Number of matrices – How many matrices will be constructed
  • Initial matrix as consensus – Check this if you want to specify an initial matrix as consensus
  • Consensus – Specify the consensus of initial matrix
  • Matrix path – Specify the path to the initial matrix
  • Output matrix library – Matrix library to store the resulting matrices (will be created if not exists)
  • Matrix name prefix – All matrices will be created with given prefix
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