Difference between revisions of "Compute coverage by window (analysis)"

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Revision as of 18:15, 9 December 2020

Analysis title
Default-analysis-icon.png Compute coverage by window
Provider
Institute of Systems Biology
Class
TrackCoverageAnalysis
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Calculates the coverage of given track in fixed windows.

Parameters:

  • Input track – Track to calculate coverage for
  • Sequences – Collection of sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Window size – Size of the window to average the coverage
  • Step – Number of bp to step (at least 1000)
  • Output empty intervals – When checked, intervals without single site will appear in the output table as well
  • Output table – Path to the output table
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