Common and IPS scores correlation (analysis)

From BioUML platform
Revision as of 12:59, 27 June 2013 by BioUML wiki Bot (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Analysis title
Default-analysis-icon.png Common and IPS scores correlation
Provider
Institute of Systems Biology
Class
CommonAndIPSCorrelation
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Correlation between common score and IPS-score for best IPS-sites in single Chip-Seq track

Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Input track – Select input ChIP-seq track (must be the result of 'Merge binding regions for cell-lines' analysis)
  • Matrix – Path to positional weight matrix
  • Minimal region length – Minimal length of sequence region
  • Output table – Table with charts will be created in this location
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox