Difference between revisions of "Cis-module identification (analysis)"

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(Default analysis icon as separate file)
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:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Class
 
;Class
:{{Class|ru.biosoft.bsa.analysis.bindingRegions.CisModuleIdentification}}
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:{{Class|biouml.plugins.bindingregions.analysis.CisModuleIdentification}}
 
;Plugin
 
;Plugin
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
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:[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]
  
 
==== Description ====
 
==== Description ====
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* '''Minimal number of overlaps''' – Minimal number of overlaps
 
* '''Minimal number of overlaps''' – Minimal number of overlaps
 
* '''Type-2 cis-modules''' – Check this if you want to identify type-2 cis-modules
 
* '''Type-2 cis-modules''' – Check this if you want to identify type-2 cis-modules
* '''Path to output folder''' – Output folder will be created under this location
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* '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]

Latest revision as of 12:19, 25 August 2015

Analysis title
Default-analysis-icon.png Cis-module identification
Provider
Institute of Systems Biology
Class
CisModuleIdentification
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

[edit] Description

Cis-module identification (type-1 and type-2)

[edit] Parameters:

  • Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
  • Minimal number of overlaps – Minimal number of overlaps
  • Type-2 cis-modules – Check this if you want to identify type-2 cis-modules
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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