Difference between revisions of "Cis-module identification (analysis)"
From BioUML platform
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Default-analysis-icon.png]] Cis-module identification |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Class | ;Class | ||
| − | :{{Class| | + | :{{Class|biouml.plugins.bindingregions.analysis.CisModuleIdentification}} |
;Plugin | ;Plugin | ||
| − | :[[ | + | :[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]] |
==== Description ==== | ==== Description ==== | ||
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* '''Minimal number of overlaps''' – Minimal number of overlaps | * '''Minimal number of overlaps''' – Minimal number of overlaps | ||
* '''Type-2 cis-modules''' – Check this if you want to identify type-2 cis-modules | * '''Type-2 cis-modules''' – Check this if you want to identify type-2 cis-modules | ||
| − | * '''Path to output folder''' – Output folder will be created under this location | + | * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Latest revision as of 12:19, 25 August 2015
- Analysis title
Cis-module identification
- Provider
- Institute of Systems Biology
- Class
CisModuleIdentification- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Cis-module identification (type-1 and type-2)
[edit] Parameters:
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Minimal number of overlaps – Minimal number of overlaps
- Type-2 cis-modules – Check this if you want to identify type-2 cis-modules
- Path to output folder – Output folder will be created under this location when it doesn't exist
