Difference between revisions of "Chromosome enrichment (analysis)"

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;Analysis title
 
;Analysis title
:[[File:BSA-Chromosome-enrichment-icon.png]] Chromosome enrichment
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:[[File:Default-analysis-icon.png]] Chromosome enrichment
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 +
;Class
 +
:{{Class|ru.biosoft.bsa.analysis.ChromosomeEnrichment}}
 +
;Plugin
 +
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
  
 
==== Description ====
 
==== Description ====
Find chromosomes enriched with given genes
+
Find chromosomes enriched with given genes.
  
 
==== Parameters: ====
 
==== Parameters: ====
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* '''Genome''' – Genome
 
* '''Genome''' – Genome
 
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
** '''Sequence collection''' – Sequence collection
+
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
 
** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki>
 
** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki>
 
* '''Output table''' – Output table
 
* '''Output table''' – Output table
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
+
[[Category:Unclassified (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Default-analysis-icon.png Chromosome enrichment
Provider
Institute of Systems Biology
Class
ChromosomeEnrichment
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Find chromosomes enriched with given genes.

[edit] Parameters:

  • Input genes – Input genes
  • Genome – Genome
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
    • Genome ID string – Something like 'hg18' or 'mm6'
  • Output table – Output table
  • Output image – Output image
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