Difference between revisions of "ChIP-Seq peaks clusterization (analysis)"

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==== Parameters: ====
 
==== Parameters: ====
  
* '''Input track''' – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
+
* '''Input track''' – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
 
* '''Type of data transformation''' – Type of data transformation
 
* '''Type of data transformation''' – Type of data transformation
 
* '''Number of clusters''' – Number of clusters
 
* '''Number of clusters''' – Number of clusters
 
* '''Do add numbers of overlaps''' – Do add numbers of overlaps to the set of peak characteristics?
 
* '''Do add numbers of overlaps''' – Do add numbers of overlaps to the set of peak characteristics?
* '''Path to output folder''' – Output folder will be created under this location
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* '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]

Latest revision as of 19:00, 13 February 2017

Analysis title
Default-analysis-icon.png ChIP-Seq peaks clusterization
Provider
Institute of Systems Biology
Class
ChIPSeqPeaksClusterization
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

[edit] Description

clusterization of ChIP-Seq peaks ont the basis of peaks characteristics

[edit] Parameters:

  • Input track – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
  • Type of data transformation – Type of data transformation
  • Number of clusters – Number of clusters
  • Do add numbers of overlaps – Do add numbers of overlaps to the set of peak characteristics?
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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