CRISPR Cas9 and specific oligonucleotides (analysis)

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Analysis title
Default-analysis-icon.png CRISPR Cas9 and specific oligonucleotides
Provider
Institute of Systems Biology
Class
CrisprCas9AndOligths
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Identification of oligonucleotides specific to given gene

Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Gene type – Select gene type
  • Gene name – Select gene name
  • Length of each flank of gene – Length of each flank of gene
  • Is long oligonucleotide (N)8-(N)12-NGG – Otherwise short olig (N)12-NGG
  • Path to output folder – Output folder will be created under this location
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