Difference between revisions of "CNVnator genotype output (file format)"
From BioUML platform
(Target element type added) |
m ({{Type link}} used) |
||
Line 2: | Line 2: | ||
:CNVnator genotype output (*.genotype) | :CNVnator genotype output (*.genotype) | ||
;Element type | ;Element type | ||
− | : | + | :{{Type link|elementType}} |
;Plugin | ;Plugin | ||
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] |
Revision as of 16:36, 17 May 2013
- File format title
- CNVnator genotype output (*.genotype)
- Element type
- File:Type-elementType-icon.png elementType
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
CNVnator genotype output (*.genotype)
These files produced by CNVnator software. Each output file is space-separated text file, which consists of the following columns:
- "Genotype" word
- Chromosomic position like "chr1:99801-100600"
- Source
- Number of copies
- Number of copies for low coverage samples
Example:
Genotype chrM:1-16600 5173T.root 576.984 563.799 Genotype chr1:1-13000 5173T.root 0.377524 0.368896 Genotype chr1:17601-51400 5173T.root 0.178211 0.174139 Genotype chr1:53301-54000 5173T.root 0.174089 0.170111 Genotype chr1:64201-64600 5173T.root 0.195805 0.19133