Difference between revisions of "Biouml.plugins.bindingregions (plugin)"
From BioUML platform
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Analysis methods defined in this plugin: | Analysis methods defined in this plugin: | ||
*[[File:Default-analysis-icon.png]] [[Analysis of Cis-Regulatory Modules (analysis)|Analysis of Cis-Regulatory Modules]] | *[[File:Default-analysis-icon.png]] [[Analysis of Cis-Regulatory Modules (analysis)|Analysis of Cis-Regulatory Modules]] | ||
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*[[File:Default-analysis-icon.png]] [[Binding regions summary (analysis)|Binding regions summary]] | *[[File:Default-analysis-icon.png]] [[Binding regions summary (analysis)|Binding regions summary]] | ||
*[[File:Default-analysis-icon.png]] [[ChIP-Seq characteristics distribution (analysis)|ChIP-Seq characteristics distribution]] | *[[File:Default-analysis-icon.png]] [[ChIP-Seq characteristics distribution (analysis)|ChIP-Seq characteristics distribution]] | ||
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*[[File:Default-analysis-icon.png]] [[IPS prediction (analysis)|IPS prediction]] | *[[File:Default-analysis-icon.png]] [[IPS prediction (analysis)|IPS prediction]] | ||
*[[File:Default-analysis-icon.png]] [[IPS-scores in SNPs (analysis)|IPS-scores in SNPs]] | *[[File:Default-analysis-icon.png]] [[IPS-scores in SNPs (analysis)|IPS-scores in SNPs]] | ||
| + | *[[File:Default-analysis-icon.png]] [[Identical best site ROC curves (analysis)|Identical best site ROC curves]] | ||
*[[File:Default-analysis-icon.png]] [[Locations of best sites (analysis)|Locations of best sites]] | *[[File:Default-analysis-icon.png]] [[Locations of best sites (analysis)|Locations of best sites]] | ||
*[[File:Default-analysis-icon.png]] [[Merge binding regions for cell-lines (analysis)|Merge binding regions for cell-lines]] | *[[File:Default-analysis-icon.png]] [[Merge binding regions for cell-lines (analysis)|Merge binding regions for cell-lines]] | ||
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*[[File:Default-analysis-icon.png]] [[Non-merged ChIP-Seq tracks summary (analysis)|Non-merged ChIP-Seq tracks summary]] | *[[File:Default-analysis-icon.png]] [[Non-merged ChIP-Seq tracks summary (analysis)|Non-merged ChIP-Seq tracks summary]] | ||
*[[File:Default-analysis-icon.png]] [[ROC curves for best sites union (analysis)|ROC curves for best sites union]] | *[[File:Default-analysis-icon.png]] [[ROC curves for best sites union (analysis)|ROC curves for best sites union]] | ||
| + | *[[File:Default-analysis-icon.png]] [[ROC curves in grouped peaks (analysis)|ROC curves in grouped peaks]] | ||
*[[File:Default-analysis-icon.png]] [[SNP regions in genome (analysis)|SNP regions in genome]] | *[[File:Default-analysis-icon.png]] [[SNP regions in genome (analysis)|SNP regions in genome]] | ||
*[[File:Default-analysis-icon.png]] [[SNPs in binding regions (analysis)|SNPs in binding regions]] | *[[File:Default-analysis-icon.png]] [[SNPs in binding regions (analysis)|SNPs in binding regions]] | ||
Revision as of 18:41, 16 July 2013
- ID
- biouml.plugins.bindingregions
- Name
- Binding-regions related analyses
- Provider
- Institute of Systems Biology
- Version
- 0.9.4
Analysis methods
Analysis methods defined in this plugin:
Analysis of Cis-Regulatory Modules
- Binding regions summary
- ChIP-Seq characteristics distribution
- Cis-module identification
- Common and IPS scores correlation
- Correlations of best sites
- Count olig frequencies
- Create matrix by mixture of normal components
- Create matrix by mixture of normal components (ChIP-seq)
- Distinct TF classes
- Gathering genome statistics
- IPS ROC-curves
- IPS prediction
- IPS-scores in SNPs
- Identical best site ROC curves
- Locations of best sites
- Merge binding regions for cell-lines
- Mixture of normal components
- Non-merged ChIP-Seq tracks summary
- ROC curves for best sites union
- ROC curves in grouped peaks
- SNP regions in genome
- SNPs in binding regions
