Binding regions summary (analysis)
From BioUML platform
Revision as of 17:39, 7 June 2013 by BioUML wiki Bot (Talk | contribs)
- Analysis title
- File:Binding-regions-Binding-regions-summary-icon.png Binding regions summary
- Provider
- Institute of Systems Biology
- Class
BindingRegionsSummary- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Summary of binding regions, density of overlaps (creation of tables: 'summaryOfBindingRegions', 'densityOfBindingRegionOverlaps', 'chart_densityOfBindingRegionOverlaps')
Parameters:
- Input track – Select input ChIP-seq track (must be the result of 'Merge binding regions for cell-lines' analysis)
- TF names table – TF names table (TF class as a row name and TF title in 'tfName' column)
- Path to output folder – Output folder will be created under this location
